| # | Group A | MP | W | D | L | G | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|
| 1. | Garudayaksa | 6 | 4 | 1 | 1 | 20:6 | 14 | 13 | |
| 2. | Sumsel United | 5 | 3 | 1 | 1 | 10:6 | 4 | 10 | |
| 3. | PSMS Medan | 6 | 3 | 1 | 2 | 7:5 | 2 | 10 | |
| 4. | Adhyaksa | 5 | 2 | 3 | 0 | 13:7 | 6 | 9 | |
| 5. | Bekasi City | 5 | 3 | 0 | 2 | 7:3 | 4 | 9 | |
| 6. | PSPS Riau | 5 | 2 | 3 | 0 | 6:4 | 2 | 9 | |
| 7. | Persikad Depok | 5 | 2 | 1 | 2 | 7:5 | 2 | 7 | |
| 8. | Persiraja Aceh | 4 | 1 | 2 | 1 | 5:5 | 0 | 5 | |
| 9. | Persekat | 4 | 0 | 3 | 1 | 5:6 | -1 | 3 | |
| 10. | Sriwijaya | 5 | 0 | 0 | 5 | 3:10 | -7 | 0 | |
| # | Group B | MP | W | D | L | G | GD | Pts | Form |
| 1. | Persipura Jayapura | 6 | 5 | 0 | 1 | 10:3 | 7 | 15 | |
| 2. | Barito Putera | 6 | 4 | 1 | 1 | 11:2 | 9 | 13 | |
| 3. | Deltras Sidoarjo | 6 | 3 | 1 | 2 | 10:6 | 4 | 10 | |
| 4. | PSS Sleman | 4 | 3 | 1 | 0 | 6:2 | 4 | 10 | |
| 5. | Persela Lamongan | 6 | 3 | 1 | 2 | 9:7 | 2 | 10 | |
| 6. | Tornado Pekanbaru | 5 | 2 | 1 | 2 | 7:4 | 3 | 7 | |
| 7. | Balikpapan | 4 | 2 | 0 | 2 | 7:7 | 0 | 6 | |
| 8. | Persiku Kudus | 5 | 1 | 1 | 3 | 5:8 | -3 | 4 | |
| 9. | Persipal BU | 5 | 0 | 4 | 1 | 3:6 | -3 | 4 | |
| 10. | PSIS Semarang | 4 | 0 | 0 | 4 | 1:12 | -11 | 0 |